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cropseq guide puro vector  (Addgene inc)


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    Structured Review

    Addgene inc cropseq guide puro vector
    Cropseq Guide Puro Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 124 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cropseq+vector/CROPseq-Guide-Puro+(Plasmid+%2386708)/pmc12680425-86-7-9
    Average 96 stars, based on 124 article reviews
    cropseq guide puro vector - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    Amplification:

    Article Title: A genome-wide atlas of human cell morphology
    Article Snippet: In order to prepare pooled plasmid libraries, targeting and non-targeting guide subpools were first individually amplified by dialout PCR using orthogonal primer pairs. . PCR products were purified using the QIAquick PCR Purification Kit (Qiagen LLC #28104). .. The amplified libraries were cloned into the CROPseq vector (Addgene #86708) via Golden Gate assembly using BsmBI restriction sites as previously described . .. To prevent self ligation events in Golden Gate reactions, the CROPseq vector was pre-digested and purified via gel extraction using the QIAquick Gel Extraction Kit (Qiagen LLC #28706) in order to remove the filler sequence.

    Clone Assay:

    Article Title: A genome-wide atlas of human cell morphology
    Article Snippet: In order to prepare pooled plasmid libraries, targeting and non-targeting guide subpools were first individually amplified by dialout PCR using orthogonal primer pairs. . PCR products were purified using the QIAquick PCR Purification Kit (Qiagen LLC #28104). .. The amplified libraries were cloned into the CROPseq vector (Addgene #86708) via Golden Gate assembly using BsmBI restriction sites as previously described . .. To prevent self ligation events in Golden Gate reactions, the CROPseq vector was pre-digested and purified via gel extraction using the QIAquick Gel Extraction Kit (Qiagen LLC #28706) in order to remove the filler sequence.

    Article Title: High-dimensional phenotyping to define the genetic basis of cellular morphology
    Article Snippet: .. To functionally validate the rare-variant burden associations, we designed sgRNAs targeting the transcriptional start site (TSS) for each gene using CRISPick software (Doench, 2016, Sanson, 2018). sgRNA oligonucleotides were cloned into the CROPseq vector using a Golden Gate cloning protocol (Addgene: #106280, Juong, 2017). ..

    Article Title: High-dimensional phenotyping to define the genetic basis of cellular morphology.
    Article Snippet: .. CRISPRi sgRNA design, cloning, and virus production To functionally validate the rare-variant burden associations, we designed sgRNAs targeting the transcriptional start site (TSS) for each gene using CRISPick software (Doench, 2016, Sanson, 2018). sgRNA Nature Communications | (2024) 15:347 9 oligonucleotides were cloned into the CROPseq vector using a Golden Gate cloning protocol (Addgene: #106280, Juong, 2017). ..

    Software:

    Article Title: High-dimensional phenotyping to define the genetic basis of cellular morphology
    Article Snippet: .. To functionally validate the rare-variant burden associations, we designed sgRNAs targeting the transcriptional start site (TSS) for each gene using CRISPick software (Doench, 2016, Sanson, 2018). sgRNA oligonucleotides were cloned into the CROPseq vector using a Golden Gate cloning protocol (Addgene: #106280, Juong, 2017). ..

    Article Title: High-dimensional phenotyping to define the genetic basis of cellular morphology.
    Article Snippet: .. CRISPRi sgRNA design, cloning, and virus production To functionally validate the rare-variant burden associations, we designed sgRNAs targeting the transcriptional start site (TSS) for each gene using CRISPick software (Doench, 2016, Sanson, 2018). sgRNA Nature Communications | (2024) 15:347 9 oligonucleotides were cloned into the CROPseq vector using a Golden Gate cloning protocol (Addgene: #106280, Juong, 2017). ..

    Cloning:

    Article Title: High-dimensional phenotyping to define the genetic basis of cellular morphology
    Article Snippet: .. To functionally validate the rare-variant burden associations, we designed sgRNAs targeting the transcriptional start site (TSS) for each gene using CRISPick software (Doench, 2016, Sanson, 2018). sgRNA oligonucleotides were cloned into the CROPseq vector using a Golden Gate cloning protocol (Addgene: #106280, Juong, 2017). ..

    Article Title: High-dimensional phenotyping to define the genetic basis of cellular morphology.
    Article Snippet: .. CRISPRi sgRNA design, cloning, and virus production To functionally validate the rare-variant burden associations, we designed sgRNAs targeting the transcriptional start site (TSS) for each gene using CRISPick software (Doench, 2016, Sanson, 2018). sgRNA Nature Communications | (2024) 15:347 9 oligonucleotides were cloned into the CROPseq vector using a Golden Gate cloning protocol (Addgene: #106280, Juong, 2017). ..

    Virus:

    Article Title: High-dimensional phenotyping to define the genetic basis of cellular morphology.
    Article Snippet: .. CRISPRi sgRNA design, cloning, and virus production To functionally validate the rare-variant burden associations, we designed sgRNAs targeting the transcriptional start site (TSS) for each gene using CRISPick software (Doench, 2016, Sanson, 2018). sgRNA Nature Communications | (2024) 15:347 9 oligonucleotides were cloned into the CROPseq vector using a Golden Gate cloning protocol (Addgene: #106280, Juong, 2017). ..

    Construct:

    Article Title: Tethering distinct molecular profiles of single cells by their lineage histories to investigate sources of cell state heterogeneity
    Article Snippet: .. Target/sgRNA construct: In order to integrate CRISPR targets and sgRNAs into the genome, we modified the CROPseq vector ( ) (Addgene ID 86708), which expresses an sgRNA and a PolII transcript. ..

    CRISPR:

    Article Title: Tethering distinct molecular profiles of single cells by their lineage histories to investigate sources of cell state heterogeneity
    Article Snippet: .. Target/sgRNA construct: In order to integrate CRISPR targets and sgRNAs into the genome, we modified the CROPseq vector ( ) (Addgene ID 86708), which expresses an sgRNA and a PolII transcript. ..

    Modification:

    Article Title: Tethering distinct molecular profiles of single cells by their lineage histories to investigate sources of cell state heterogeneity
    Article Snippet: .. Target/sgRNA construct: In order to integrate CRISPR targets and sgRNAs into the genome, we modified the CROPseq vector ( ) (Addgene ID 86708), which expresses an sgRNA and a PolII transcript. ..



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    a , Overview of <t>gRNA</t> assignment for CRISPRi screen. b , Coverage for each gRNA in CRISPRi screen. Data points represent means ± SEM. n = individual gRNAs from 1 SDR-seq experiment. c , Relative distance of gRNA binding site to transcription start site (TSS). Positive values are after TSS (within transcript), negative values before transcript. Size indicates P -value calculated using MAST with Benjamini-Hochberg correction for multiple testing. Significant hits ( P -value < 0.05) are colored. d , Outline of testing for PE iPSCs. Editing can be measured by repairing a <t>non-functional</t> <t>EGFP</t> that was integrated via a lentivirus. e , Flow cytometry indicating editing in PE iPSCs.
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    Image Search Results


    a , Overview of gRNA assignment for CRISPRi screen. b , Coverage for each gRNA in CRISPRi screen. Data points represent means ± SEM. n = individual gRNAs from 1 SDR-seq experiment. c , Relative distance of gRNA binding site to transcription start site (TSS). Positive values are after TSS (within transcript), negative values before transcript. Size indicates P -value calculated using MAST with Benjamini-Hochberg correction for multiple testing. Significant hits ( P -value < 0.05) are colored. d , Outline of testing for PE iPSCs. Editing can be measured by repairing a non-functional EGFP that was integrated via a lentivirus. e , Flow cytometry indicating editing in PE iPSCs.

    Journal: Nature Methods

    Article Title: Functional phenotyping of genomic variants using joint multiomic single-cell DNA–RNA sequencing

    doi: 10.1038/s41592-025-02805-0

    Figure Lengend Snippet: a , Overview of gRNA assignment for CRISPRi screen. b , Coverage for each gRNA in CRISPRi screen. Data points represent means ± SEM. n = individual gRNAs from 1 SDR-seq experiment. c , Relative distance of gRNA binding site to transcription start site (TSS). Positive values are after TSS (within transcript), negative values before transcript. Size indicates P -value calculated using MAST with Benjamini-Hochberg correction for multiple testing. Significant hits ( P -value < 0.05) are colored. d , Outline of testing for PE iPSCs. Editing can be measured by repairing a non-functional EGFP that was integrated via a lentivirus. e , Flow cytometry indicating editing in PE iPSCs.

    Article Snippet: The gRNA screening vector was a modified CROP-seq vector (Addgene, 86708) to also express eGFP and include a distinct gRNA CS in the scaffold of the gRNA .

    Techniques: Binding Assay, Functional Assay, Flow Cytometry